Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs13004470 chr2:242511083 C/T 7.69E-11 174 25.87 24.07 10.3 KM Plot
PCPG rs13024132 chr2:24344628 C/G 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs13028767 chr2:24335554 T/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs13054581 chr22:21283074 T/C 8.52E-5 176 12.93 31.2 25.2 KM Plot
PCPG rs13058817 chr3:53024139 C/T 6.73E-6 176 25.28 26.05 11.78 KM Plot
PCPG rs13060044 chr3:80546587 C/T 6.02E-5 178 19.87 24.03 27.2 KM Plot
PCPG rs13060063 chr3:80583738 G/T 6.33E-5 177 19.53 24.53 27.4 KM Plot
PCPG rs13069006 chr3:52973305 G/C 6.56E-6 176 25.17 26.57 11.78 KM Plot
PCPG rs13072395 chr3:52980573 T/C 6.73E-6 176 25.08 30.52 11.78 KM Plot
PCPG rs13072457 chr3:53102389 G/A 9.74E-6 173 25.08 25.53 11.78 KM Plot
PCPG rs13077864 chr3:136609838 T/C 0.000423 172 24.5 31.47 22.15 KM Plot
PCPG rs13078405 chr3:80600837 T/C 0.000136 176 19.87 23.53 27.4 KM Plot
PCPG rs13078834 chr3:52984770 G/T 6.73E-6 176 25.08 30.52 11.78 KM Plot
PCPG rs13078962 chr3:39167458 T/C 7.83E-7 178 25.87 20.47 24.72 KM Plot
PCPG rs13078971 chr3:53103645 G/C 9.74E-6 173 25.08 25.53 11.78 KM Plot